PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4138s0005.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 395aa    MW: 43949.8 Da    PI: 9.2089
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4138s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603e-19232265134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Cagra.4138s0005.1.p 232 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 265
                          *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-20226278IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-13227265No hitNo description
PROSITE profilePS5011412.466230262IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-15230265IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.45E-14231263No hitNo description
PfamPF003205.8E-17232265IPR000679Zinc finger, GATA-type
PROSITE patternPS003440232257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLLHHHHHNH QVPSNSSSSS SSISSLSSYL  60
PFLINSQEDQ HVAYNNTYHA DHLHLSQPLK AKMFVANGGS SSSYDHMVPK KETRLKLTIR  120
KKDHEDQTDH LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NNQPTDHETN NNNHKGNDHY  180
PLNHKTNFNE DHDDLNLKKV LTRTTTAATT DNRYNTSNEI GYGNNNGVIR VCSDCNTTKT  240
PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAARVQQSP LKKKLQNKKK  300
RSNGGEKYNL SPPVVAKAKK CKMVQAEEEE TVAGDSEISK PTTSSNSSIS SNKFCFDDLT  360
IMLSKSSAYQ QVFPQDEKEA AILLMALSYG MVHG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0889530.0AY088953.1 Arabidopsis thaliana clone 110454 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280600.10.0hypothetical protein CARUB_v10026556mg
SwissprotQ5HZ360.0GAT21_ARATH; GATA transcription factor 21
TrEMBLR0GQS50.0R0GQS5_9BRAS; Uncharacterized protein
STRINGAT5G56860.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21092675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-166GATA family protein